Francisco Couto

2017
Barata, A., Carvalho L., & Couto F. M. (2017).  Anthropometric data analytics: a portuguese case study. International Conference on Practical Applications of Computational Biology & Bioinformatics. 92–100.
Ferreira, J. D., Inácio B., Salek R. M., & Couto F. M. (2017).  Assessing Public Metabolomics Metadata, Towards Improving Quality. Journal of integrative bioinformatics. 14,
Fernandes, M., Decouchant J., Couto F. M., & Esteves-Verissimo P. (2017).  Cloud-Assisted Read Alignment and Privacy. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. 616, 220.
Lamurias, A., Clarke L. A., & Couto F. M. (2017).  Extracting microRNA-gene relations from biomedical literature using distant supervision. PloS one. 12, e0171929.
Lamurias, A., Ferreira J. D., Clarke L. A., & Couto F. M. (2017).  Generating a Tolerogenic Cell Therapy Knowledge Graph from Literature. Frontiers in Immunology. 8, 1656.
Cogo, V. V., Bessani A., Couto F. M., Gama-Carvalho M., Fernandes M., & Esteves-Verissimo P. (2017).  How Can Photo Sharing Inspire Sharing Genomes?. 11th International Conference on Practical Applications of Computational Biology & Bioinformatics. 616, 74.
Lobo, M., Lamurias A., & Couto F. M. (2017).  Identifying Human Phenotype Terms by Combining Machine Learning and Validation Rules. BioMed Research International. 2017,
Campos, L., Pedro V., & Couto F. (2017).  Impact of translation on named-entity recognition in radiology texts. Database. 2017,
Asif, M., Rasga C., Martiniano H., Santos JX., Marques AR., Couto FM., et al. (2017).  An integrative system biology approach for dissecting Autism Spectrum Disorder. 2º Dia do Jovem Investigador do Instituto Nacional de Saúde Doutor Ricardo Jorge, 8 maio 2017.
Asif, M., Martiniano H. F., Rasga C., Marques A. R., Santos J. X., Couto F. M., et al. (2017).  An integrative system biology approach to delineate complex genotype-phenotype associations in Autism Spectrum Disorder. 2nd BioSys Retreat 2017, 6-7 October, 2017.
Couto, F. M., Campos L., & Lamurias A. (2017).  MER: a minimal named-entity recognition tagger and annotation server. Proceedings of the BioCreative, Conference: BeCalm challenge evaluation workshop (Biocreative V.5), at Barcelona, Spain. 5,
Inácio, B., Ferreira J. D., & Couto F. M. (2017).  Metadata Analyser: measuring metadata quality. International Conference on Practical Applications of Computational Biology & Bioinformatics. 197–204.
Rodrigues, M. J., & Couto F. M. (2017).  MoRS at SemEval-2017 task 3: Easy to use SVM in ranking tasks. Proceedings of the 11th International Workshop on Semantic Evaluation (SemEval-2017). 287–291.
Campos, L., & Couto F. (2017).  MRA-Proof of Concept of a Multilingual Report Annotator Web Application. arXiv preprint arXiv:1704.01748.
Lamurias, A., Sousa D., Pereira S., Clarke L., & Couto F. M. (2017).  ULISBOA at SemEval-2017 Task 12: Extraction and classification of temporal expressions and events. Proceedings of the 11th International Workshop on Semantic Evaluation (SemEval-2017). 1019–1023.
2016
Lamurias, A., Rodrigues M. J., Clarke L. A., & Couto F. M. (2016).  Extraction of Regulatory Events using Kernel-based Classifiers and Distant Supervision. ACL 2016. 88.
Gonçalves, D., Costa M., & Couto F. M. (2016).  A Flexible Recommendation System for Cable TV. arXiv preprint arXiv:1609.02451.
Bastos, H. P., Sousa L., Clarke L. A., & Couto F. M. (2016).  Functional coherence metrics in protein families. Journal of biomedical semantics. 7, 41.
Barros, M., Couto F. M., & (2016).  Knowledge Representation and Management: a linked data perspective. IMIA Yearbook. 178–183.
Gonçalves, D., Costa M., & Couto F. M. (2016).  A Large-Scale Characterization of User Behaviour in Cable TV. arXiv preprint arXiv:1609.02453.
Faria, D., Pesquita C., Balasubramani B. S., Martins C., Cardoso J., Curado H., et al. (2016).  OAEI 2016 results of AML.. OM@ ISWC. 138–145.
Barros, M., Lamurias A., Figueiró G., Antunes M., Teixeira J., Pinheiro A., et al. (2016).  ULISBOA at SemEval-2016 Task 12: Extraction of temporal expressions, clinical events and relations using IBEnt.. SemEval@ NAACL-HLT. 1263–1267.
Rodrigues, M. J., Falé M., Lamurias A., & Couto F. M. (2016).  WS4A: a biomedical question and answering system based on public web services and ontologies. arXiv preprint arXiv:1609.08492.
2015
Groza, T.., Köhler S.., Doelken S.., Collier N.., Oellrich A.., Smedley D.., et al. (2015).  Automatic concept recognition using the Human Phenotype Ontology}reference and test suite corpora. Database. 2015, 1-13.
Krallinger, M.., Rabal O.., Leitner F.., Vazquez M.., Salgado D.., Lu Z.., et al. (2015).  The CHEMDNER corpus of chemicals and drugs and its annotation principles. Journal of Cheminformatics. 7, S2, 1-20.

Pages